The pathogens originating from diffuse pollution have raised much concern recently. In many countries, pathogen levels are monitored in surface water by measuring the pathogen indicator organism level, which indicates the concentration of pathogen associated microorganisms to determine contamination. Among indicator organisms, total coliform, fecal coliform, and Escherichia coli were selected for study, and their concentration as well as their flow rate were monitored at monitoring stations from October, 2001 to April, 2003. Monitoring stations include six sampling stations in the Geum River, two small watersheds used for forestry and agricultural land, one large wastewater treatment plant, one separate sewer overflow site, and one separate sewer overflow site in the Geum River basin. The coliform concentration of the combined sewer overflow was the highest, followed by the runoff from agricultural land use, the separate sewer overflow, and the runoff from forestry land use. The Pearson correlation coefficient for flow rate against total coliform concentration was 0.71 and was significant at 0.01 level, while the Pearson coefficient for other water quality constituents showed weak correlation (-0.36 to +0.37) against flow rate. Coliform concentration showed higher correlation against suspended solid concentration or flow rate during storm flow condition than during low flow condition. Two different relationship lines could explain the relationships between the flow rate and coliform loadings. Load duration curve technique was presented to assess the relative contributions of diffuse and point source pollution to the pathogen level at monitoring sites in the Geum River.