Synthetic pyrrole-imidazole polyamide inhibits expression of the human transforming growth factor-beta1 gene

J Pharmacol Exp Ther. 2005 Nov;315(2):571-5. doi: 10.1124/jpet.105.089086. Epub 2005 Aug 24.

Abstract

Pyrrole-imidazole (Py-Im) polyamides can bind to the predetermined base pairs in the minor groove of double-helical DNA with high affinity. These synthetic small molecules can interfere with transcription factor-DNA interaction and inhibit or activate the transcription of corresponding genes. In the present study, we designed and synthesized a Py-Im polyamide to target -545 to -539 base pairs of human transforming growth factor-beta1 (hTGF-beta1) promoter adjacent to the fat-specific element 2 (FSE2) to inhibit the expression of the gene. Gel mobility shift assay showed that the synthetic Py-Im polyamide binds to its corresponding double-strand oligonucleotides, whereas the mismatch polyamides did not bind. Fluorescein isothiocyanate-labeled Py-Im polyamide was detected in the nuclei of human vascular smooth muscle cells (VSMCs) after 2- to 48-h incubation. Py-Im polyamide significantly decreased the promoter activity of hTGF-beta1 determined by in vitro transcription experiments and luciferase assay. In cultured human VSMCs, Py-Im polyamide targeting hTGF-beta1 promoter significantly inhibited expressions of hTGF-beta1 mRNA and protein. These results indicate that the synthetic Py-Im polyamide designed to bind hTGF-beta1 promoter inhibited hTGF-beta1 gene and protein expression successfully. This novel agent will be used for the TGF-beta-related diseases as a gene therapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Blotting, Western
  • Cells, Cultured
  • DNA / metabolism
  • Deoxyribonucleases, Type II Site-Specific / biosynthesis
  • Deoxyribonucleases, Type II Site-Specific / genetics
  • Electrophoretic Mobility Shift Assay
  • Endothelial Cells / drug effects
  • Endothelial Cells / metabolism
  • Gene Expression Regulation / drug effects*
  • Humans
  • Indicators and Reagents
  • Nylons / chemical synthesis
  • Nylons / pharmacology*
  • Oligonucleotides / metabolism
  • Promoter Regions, Genetic
  • Pyrroles / chemical synthesis
  • Pyrroles / pharmacology*
  • Reverse Transcriptase Polymerase Chain Reaction
  • Transforming Growth Factor beta / biosynthesis*
  • Transforming Growth Factor beta / genetics*
  • Transforming Growth Factor beta1
  • Tubulin / biosynthesis
  • Tubulin / genetics

Substances

  • Indicators and Reagents
  • Nylons
  • Oligonucleotides
  • Pyrroles
  • TGFB1 protein, human
  • Transforming Growth Factor beta
  • Transforming Growth Factor beta1
  • Tubulin
  • DNA
  • endodeoxyribonuclease FseI
  • Deoxyribonucleases, Type II Site-Specific