Preferential binding of a G-quadruplex ligand to human chromosome ends

Nucleic Acids Res. 2005 Jul 28;33(13):4182-90. doi: 10.1093/nar/gki722. Print 2005.

Abstract

The G-overhangs of telomeres are thought to adopt particular conformations, such as T-loops or G-quadruplexes. It has been suggested that G-quadruplex structures could be stabilized by specific ligands in a new approach to cancer treatment consisting in inhibition of telomerase, an enzyme involved in telomere maintenance and cell immortality. Although the formation of G-quadruplexes was demonstrated in vitro many years ago, it has not been definitively demonstrated in living human cells. We therefore investigated the chromosomal binding of a tritiated G-quadruplex ligand, 3H-360A (2,6-N,N'-methyl-quinolinio-3-yl)-pyridine dicarboxamide [methyl-3H]. We verified the in vitro selectivity of 3H-360A for G-quadruplex structures by equilibrium dialysis. We then showed by binding experiments with human genomic DNA that 3H-360A has a very potent selectivity toward G-quadruplex structures of the telomeric 3'-overhang. Finally, we performed autoradiography of metaphase spreads from cells cultured with 3H-360A. We found that 3H-360A was preferentially bound to chromosome terminal regions of both human normal (peripheral blood lymphocytes) and tumor cells (T98G and CEM1301). In conclusion, our results provide evidence that a specific G-quadruplex ligand interacts with the terminal ends of human chromosomes. They support the hypothesis that G-quadruplex ligands induce and/or stabilize G-quadruplex structures at telomeres of human cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cell Line, Tumor
  • Cells, Cultured
  • Chromosomes, Human / chemistry*
  • Chromosomes, Human / metabolism
  • DNA / chemistry
  • DNA / metabolism*
  • G-Quadruplexes
  • Guanine / chemistry
  • Humans
  • Ligands
  • Lymphocytes / ultrastructure
  • Metaphase
  • Pyridines / chemistry
  • Pyridines / metabolism*
  • Quinolines / chemistry
  • Quinolines / metabolism*
  • Telomere / chemistry*
  • Telomere / metabolism

Substances

  • 2,6-N,N'-methyl-quinolinio-3-yl-pyridine dicarboxamide
  • Ligands
  • Pyridines
  • Quinolines
  • Guanine
  • DNA