Crystallization and preliminary X-ray crystallographic analysis of the pediocin immunity protein (PedB) from Pediococcus pentosaceus at 1.35 A resolution

Biochim Biophys Acta. 2005 Aug 10;1751(2):205-8. doi: 10.1016/j.bbapap.2005.06.004.

Abstract

PedB, a bacterial immunity protein conferring immunity to a newly identified pediocin (pediocin PP-1), was crystallized by the hanging-drop vapor diffusion method at 296 K. A 1.35 A data set has been collected from a single crystal at 100 K using synchrotron-radiation source. The PedB crystals belong to the hexagonal space group P6(2) or P6(4), with unit cell parameters a = b = 62.2, c = 39.9 A. Analysis of the packing density shows that the asymmetric unit probably contains one molecule with a solvent content of 33.8%.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / biosynthesis
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Crystallization
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Genetic Vectors / genetics
  • Molecular Sequence Data
  • Pediococcus / chemistry
  • Pediococcus / genetics*
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / chemistry*
  • Sequence Homology, Amino Acid
  • Transformation, Genetic

Substances

  • Bacterial Proteins
  • PedB protein, Pediococcus pentosaceus
  • Recombinant Proteins