A convenient and sensitive fluorescence resonance energy transfer assay for RNase L and 2',5' oligoadenylates

Methods Mol Med. 2005:116:103-13. doi: 10.1385/1-59259-939-7:103.

Abstract

Interferon action against viruses is mediated in part through a ribonucleic acid (RNA) decay pathway known as the 2-5A system. Unusual 5'-triphosphorylated, 2',5'-linked oligoadenylates (2-5A) are produced in mammalian cells by interferon-inducible 2-5A synthetases (OAS) in response to viral double-stranded RNA. 2-5A activates a uniquely regulated endoribonuclease, RNase L, resulting in the cleavage of single-stranded viral and cellular RNAs, thus suppressing viral replication. In addition, RNase L was recently identified as a strong candidate for the hereditary prostate cancer 1 susceptibility allele. RNase L is ubiquitously expressed at basal levels in a wide range of mammalian cell types. Conventional RNase L assays, which can be inconvenient and cumbersome, typically involve cleavage of radioactively labeled RNA species or of endogenous ribosomal RNA. Here we describe a convenient, rapid, nonradioactive, and relatively inexpensive fluorescence resonance energy transfer (FRET) that may be used to accurately measure levels of either 2-5A or RNase L activity with a high degree of specificity and sensitivity. The RNA probe used in the FRET assay was designed based on a region of respiratory syncytial genomic RNA. We demonstrate the utility of our FRET assay with several novel biostable analogs of 2-5A.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • 2',5'-Oligoadenylate Synthetase / genetics
  • 2',5'-Oligoadenylate Synthetase / metabolism
  • Adenine Nucleotides / chemistry
  • Adenine Nucleotides / metabolism*
  • Animals
  • Endoribonucleases / genetics
  • Endoribonucleases / metabolism*
  • Enzyme Activation
  • Fluorescence Resonance Energy Transfer / methods*
  • Oligoribonucleotides / chemistry
  • Oligoribonucleotides / metabolism*
  • RNA / metabolism
  • Sensitivity and Specificity

Substances

  • Adenine Nucleotides
  • Oligoribonucleotides
  • 2',5'-oligoadenylate
  • RNA
  • 2',5'-Oligoadenylate Synthetase
  • Endoribonucleases
  • 2-5A-dependent ribonuclease