Genome sequence of Chrysodeixis chalcites nucleopolyhedrovirus, a baculovirus with two DNA photolyase genes

J Gen Virol. 2005 Jul;86(Pt 7):2069-2080. doi: 10.1099/vir.0.80964-0.

Abstract

The complete genome sequence of a single nucleocapsid nucleopolyhedrovirus recently isolated from Chrysodeixis chalcites (ChchNPV) was determined. The viral genome has a size of 149 622 bp and an overall G+C content of 39.1 mol%. The sequence contains 151 predicted open reading frames (ORFs) with a minimal size of 50 codons. The similarity of these ORFs with those of other completely sequenced baculoviruses was calculated using a newly developed database, named GECCO. Phylogenetic analysis of the whole genome confirmed the evolutionary relationship of ChchNPV with group II NPVs, as did the absence of the NPV group I-specific gp64 gene. It is the first group II NPV to encode proliferating cell nuclear antigen. Most noteworthy is the presence of two ORFs encoding a class II cyclobutane pyrimidine dimer DNA photolyase. These two ORFs share only 45 % amino acid identity and have different promoter motifs. Twenty-two additional unique baculovirus genes were identified, including a gene encoding a novel putative RING finger protein with a possible homologue in poxviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Deoxyribodipyrimidine Photo-Lyase / genetics*
  • Genome, Viral*
  • Molecular Sequence Data
  • Moths / virology*
  • Nucleopolyhedroviruses / enzymology
  • Nucleopolyhedroviruses / genetics*
  • Open Reading Frames / genetics
  • Phylogeny
  • Sequence Analysis, DNA*
  • Viral Proteins / genetics

Substances

  • Viral Proteins
  • Deoxyribodipyrimidine Photo-Lyase

Associated data

  • GENBANK/AY864330