Identification and antigenic site analysis of foot-and-mouth disease virus from pigs and cattle in Korea

J Vet Sci. 2005 Jun;6(2):117-24.

Abstract

From May to June 2002, a total of 16 foot-and mouth disease (FMD) outbreaks due to the serotype O virus, Pan Asia strain, were recorded in Korea. The viruses were identified by antigen ELISA, RT-PCR and sequence analysis. The overall nucleotide sequence divergence of the VP1 region among the 4 isolates in 2002 was 0 to 1.4%, but between O/SKR/2002 and O/SKR/2000 isolates was 1.9-4.9%. Phylogenetic analysis with the some known strains from East Asian countries showed that the 4 Korean isolates in 2002 formed one distinct cluster, which different from clusters of Korean isolates in 2000, with in the same lineage of the ME-SA topotype strains. Deduced amino acid sequences around neutralizable antigenic site on VP1 site of O/SKR/2002 isolates were aligned and compared with other strains. At the antigenic site 1, the replacements of the critical amino acid residues at position 144 from V to L and at position 152 from A to T were observed in O/SKR/2002 viruses. For antigenic site 2 and 4, there were not significant variations in general. At the antigenic site 3, the substitutions of amino acid residues were present at positions 54 and 56 in O/SKR/2002 isolates and an alternative residue I at position 54 are observed only at the sequence of O/SKR/AS/2002 (cow) virus. And the substitution (L-->P) of significant residue at position 144 was detected at the amino acid sequence of the O/SKR/2002 (cow) virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antibodies, Viral / blood
  • Base Sequence
  • Capsid Proteins / genetics
  • Capsid Proteins / immunology*
  • Cattle
  • Cattle Diseases / epidemiology
  • Cattle Diseases / virology*
  • Cluster Analysis
  • Disease Outbreaks / veterinary*
  • Enzyme-Linked Immunosorbent Assay / veterinary
  • Epitopes / analysis
  • Foot-and-Mouth Disease / epidemiology
  • Foot-and-Mouth Disease / virology*
  • Foot-and-Mouth Disease Virus / genetics
  • Foot-and-Mouth Disease Virus / immunology*
  • Korea / epidemiology
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • Reverse Transcriptase Polymerase Chain Reaction / veterinary
  • Sequence Alignment
  • Swine
  • Swine Diseases / epidemiology
  • Swine Diseases / virology*

Substances

  • Antibodies, Viral
  • Capsid Proteins
  • Epitopes
  • RNA, Viral
  • VP1 protein, Foot-and-mouth disease virus