Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation

Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8114-9. doi: 10.1073/pnas.0503141102. Epub 2005 May 31.

Abstract

Kinases catalyze the phosphorylation of proteins, lipids, sugars, nucleosides, and other important cellular metabolites and play key regulatory roles in all aspects of eukaryotic cell physiology. Here, we describe the mining of public databases to collect the sequence information of all identified human kinase genes and the cloning of the corresponding ORFs. We identified 663 genes, 511 encoding protein kinases, and 152 encoding nonprotein kinases. We describe the successful cloning and sequence verification of 270 of these genes. Subcloning of this gene set in mammalian expression vectors and their use in high-throughput cell-based screens allowed the validation of the clones at the level of expression and the identification of previously uncharacterized modulators of the survivin promoter. Moreover, expressions of the kinase genes in bacteria, followed by autophosphorylation assays, identified 21 protein kinases that showed autocatalytic activity. The work described here will facilitate the functional assaying of this important gene family in phenotypic screens and their use in biochemical and structural studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Biological Assay
  • Catalysis
  • Cell Line
  • Cells / metabolism
  • Cloning, Molecular*
  • Computational Biology*
  • Databases, Genetic*
  • Gene Expression Regulation
  • Genetic Vectors / genetics
  • Humans
  • Molecular Sequence Data
  • Phenotype
  • Phosphorylation
  • Plasmids / genetics
  • Promoter Regions, Genetic / genetics
  • Protein Kinases / genetics*
  • Protein Kinases / isolation & purification
  • Protein Kinases / metabolism*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Reproducibility of Results

Substances

  • Recombinant Proteins
  • Protein Kinases

Associated data

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