Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator

Mol Cell. 2005 May 13;18(4):471-81. doi: 10.1016/j.molcel.2005.04.005.

Abstract

Downstream core promoter elements are an expanding class of regulatory sequences that add considerable diversity to the promoter architecture of RNA polymerase II-transcribed genes. We set out to determine the factors necessary for downstream promoter element (DPE)-dependent transcription and find that, against expectations, TFIID and the GTFs are not sufficient. Instead, the protein kinase CK2 and the coactivator PC4 establish DPE-specific transcription in an in vitro transcription system containing TFIID, Mediator, and the GTFs. Chromatin immunoprecipitation analyses using the DPE-dependent IRF-1 and TAF7 promoters demonstrated that CK2, and PC4 are present on these promoters in vivo. In contrast, neither PC4 nor CK2 were detected on the TAF1-dependent cyclin D promoter, which contains a DCE type of downstream element. Our findings also demonstrate that CK2 activity alters TFIID-dependent recognition of DCE sequences. These data establish that CK2 acts as a switch, converting the transcriptional machinery from functioning on one type of downstream element to another.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Casein Kinase II / metabolism*
  • Cell Nucleus / metabolism
  • DNA-Binding Proteins / genetics
  • Gene Expression Regulation / physiology*
  • Humans
  • Immediate-Early Proteins
  • Interferon Regulatory Factor-1
  • Membrane Proteins
  • Phosphoproteins / genetics
  • Promoter Regions, Genetic*
  • Repressor Proteins / metabolism*
  • TATA-Binding Protein Associated Factors / genetics
  • Trans-Activators / metabolism*
  • Transcription Factor TFIID / genetics
  • Transcription Factor TFIID / metabolism
  • Transcription, Genetic / physiology*

Substances

  • DNA-Binding Proteins
  • IFRD2 protein, human
  • IRF1 protein, human
  • Immediate-Early Proteins
  • Interferon Regulatory Factor-1
  • Membrane Proteins
  • Phosphoproteins
  • Repressor Proteins
  • TAF7 protein, human
  • TATA-Binding Protein Associated Factors
  • Trans-Activators
  • Transcription Factor TFIID
  • Casein Kinase II