DNA vector-based RNAi approach for stable depletion of poly(ADP-ribose) polymerase-1

Biochem Biophys Res Commun. 2005 May 27;331(1):167-74. doi: 10.1016/j.bbrc.2005.03.135.

Abstract

RNA-mediated interference (RNAi) is a powerful technique that is now being used in mammalian cells to specifically silence a gene. Some recent studies have used this technique to achieve variable extent of depletion of a nuclear enzyme poly(ADP-ribose) polymerase-1 (PARP-1). These studies reported either transient silencing of PARP-1 using double-stranded RNA or stable silencing of PARP-1 with a DNA vector which was introduced by a viral delivery system. In contrast, here we report that a simple RNAi approach which utilizes a pBS-U6-based DNA vector containing strategically selected PARP-1 targeting sequence, introduced in the cells by conventional CaPO(4) protocol, can be used to achieve stable and specific silencing of PARP-1 in different types of cells. We also provide a detailed strategy for selection and cloning of PARP-1-targeting sequences for the DNA vector, and demonstrate that this technique does not affect expression of its closest functional homolog PARP-2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cloning, Molecular
  • Cricetinae
  • DNA / genetics
  • Fibroblasts / enzymology
  • Gene Targeting
  • Genetic Vectors*
  • Humans
  • Mice
  • Mice, Knockout
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases / analysis
  • Poly(ADP-ribose) Polymerases / genetics*
  • RNA Interference*
  • Skin / cytology

Substances

  • DNA
  • PARP1 protein, human
  • PARP2 protein, human
  • Parp1 protein, mouse
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases
  • Parp2 protein, mouse