Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta

Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):935-939. doi: 10.1099/ijs.0.63383-0.

Abstract

A Gram-positive, endospore-forming, xylanase-producing bacterium isolated from a rice field was studied taxonomically. The strain grows at 10-40 degrees C and in the presence of lysozyme or 5 % (w/v) NaCl. Chemotaxonomic analysis revealed that MK-7 was the predominant menaquinone of the isolated strain, while the major fatty acid was anteiso-C(15 : 0). Comparison of 16S rRNA gene sequences showed that strain BP-23(T) fell within the radiation of the cluster comprising Paenibacillus species. The highest 16S rRNA gene sequence similarities were found with Paenibacillus illinoisensis (97.4 %), Paenibacillus pabuli (97.1 %) and Paenibacillus amylolyticus (96.9 %). The DNA-DNA relatedness of strain BP-23(T) with respect to these three species was very low (32.7, 31.6 and 23.0 %, respectively). On the basis of phenotypic and genotypic data, strain BP-23(T) should be placed in the genus Paenibacillus and designated a novel species, for which the name Paenibacillus barcinonensis sp. nov. is proposed. The type strain is BP-23(T) (=CECT 7022(T)=DSM 15478(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Endo-1,4-beta Xylanases / metabolism*
  • Genes, rRNA
  • Gram-Positive Endospore-Forming Rods / chemistry
  • Gram-Positive Endospore-Forming Rods / classification*
  • Gram-Positive Endospore-Forming Rods / genetics
  • Gram-Positive Endospore-Forming Rods / isolation & purification
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oryza / growth & development*
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Rivers*
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Spain

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Endo-1,4-beta Xylanases

Associated data

  • GENBANK/AJ716019