Consensus based validation of membrane porins

In Silico Biol. 2004;4(4):549-61.

Abstract

Porins are outermembrane beta-barrel proteins. They have varied biological functionality ranging from phage receptors, immunogenicity, pathogenicity to apoptosis. However, only a small number has been structurally and functionally characterised. A validation mechanism and a database of porins would be useful for target selection in proteomics and structural genomics work. Here we report a validation mechanism developed for membrane porins. A database server for porins, PRNDS, has been created containing experimentally proven porins and likely putative porins. Each porin is validated and ranked using a weighted scoring system developed based on six, structure and sequence based criteria. The server also predicts possible porins.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Amino Acid Sequence
  • Computational Biology / methods*
  • Consensus Sequence
  • Databases, Protein*
  • Genomics / methods
  • Porins / chemistry*
  • Porins / genetics
  • Proteomics* / methods

Substances

  • Porins