U2552 methylation at the ribosomal A-site is a negative modulator of translational accuracy

Gene. 2005 Feb 28;347(1):109-14. doi: 10.1016/j.gene.2004.12.025.

Abstract

We have recently identified RrmJ, the first encoded protein of the rrmJ-ftsH heat shock operon, as being the Um(2552) methyltransferase of 23S rRNA, and reported that rrmJ-deficient strains exhibit growth defects, reduced translation rates and reduced stability of 70S ribosomes. U2552 is an ubiquitously methylated residue. It belongs to the A loop of 23S RNA which is an essential component of the ribosome peptidyltransferase centre and interacts directly with aminoacyl(A)-site tRNA. In the present study, we show that a lack of U2552 methylation, obtained in rrmJ-deficient mutants, results in a decrease in programmed +1 and -1 translational frameshifing and a decrease in readthrough of UAA and UGA stop codons. The increased translational accuracy of rrmJ-deficient strains suggests that the interaction between aminoacyl-tRNA and U2552 is important for selection of the correct tRNA at the ribosomal A site, and supports the idea that translational accuracy in vivo is optimal rather than maximal, thus pointing to the participation of recoding events in the normal cell physiology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Cycle Proteins / genetics*
  • Cell Cycle Proteins / metabolism
  • Codon, Terminator / genetics
  • Codon, Terminator / physiology
  • Escherichia coli / genetics*
  • Escherichia coli / physiology
  • Escherichia coli Proteins / genetics*
  • Escherichia coli Proteins / metabolism
  • Frameshifting, Ribosomal / genetics
  • Frameshifting, Ribosomal / physiology
  • Gene Expression Regulation, Bacterial / genetics
  • Gene Expression Regulation, Bacterial / physiology
  • Methylation
  • Methyltransferases / genetics*
  • Methyltransferases / metabolism
  • Protein Biosynthesis / genetics*
  • Protein Biosynthesis / physiology
  • RNA, Ribosomal, 23S / genetics
  • RNA, Ribosomal, 23S / metabolism*
  • RNA, Transfer, Amino Acyl / genetics
  • RNA, Transfer, Amino Acyl / metabolism
  • Ribosomes / genetics
  • Ribosomes / metabolism*

Substances

  • Cell Cycle Proteins
  • Codon, Terminator
  • Escherichia coli Proteins
  • RNA, Ribosomal, 23S
  • RNA, Transfer, Amino Acyl
  • Methyltransferases
  • rlmE protein, E coli