Direct in vitro selection of a 2'-O-methyl aptamer to VEGF

Chem Biol. 2005 Jan;12(1):25-33. doi: 10.1016/j.chembiol.2004.10.017.

Abstract

Aptamers (protein binding oligonucleotides) have potential as a new class of targeted therapeutics. For applications requiring chronic systemic administration, aptamers must achieve high-affinity target binding while simultaneously retaining high in vivo stability, tolerability, and ease of chemical synthesis. To this end, we describe a method for generating aptamers composed entirely of 2'-O-methyl nucleotides (mRmY). We present conditions under which 2'-O-methyl transcripts can be generated directly and use these conditions to select a fully 2'-O-methyl aptamer from a library of 3 x 10(15) unique 2'-O-methyl transcripts. This aptamer, ARC245, is 23 nucleotides in length, binds to vascular endothelial growth factor (VEGF) with a Kd of 2 nM, and inhibits VEGF activity in cellular assays. Notably, ARC245 is so stable that degradation cannot be detected after 96 hr in plasma at 37 degrees C or after autoclaving at 125 degrees C. We believe ARC245 has considerable potential as an antiangiogenesis therapeutic.

MeSH terms

  • Angiogenesis Inhibitors / chemistry
  • Angiogenesis Inhibitors / metabolism
  • Angiogenesis Inhibitors / pharmacology
  • Animals
  • DNA-Directed RNA Polymerases / metabolism
  • Endothelium, Vascular / drug effects
  • Gene Library
  • Humans
  • Hydrolysis
  • Mice
  • Oligonucleotides / chemistry
  • Oligonucleotides / metabolism
  • Oligonucleotides / pharmacology*
  • Time Factors
  • Vascular Endothelial Growth Factors / antagonists & inhibitors*
  • Vascular Endothelial Growth Factors / metabolism

Substances

  • Angiogenesis Inhibitors
  • Oligonucleotides
  • Vascular Endothelial Growth Factors
  • DNA-Directed RNA Polymerases