The lipid content and fatty acid composition of depot fat were determined for 58 immature green turtles (Chelonia mydas) residing at two near-shore foraging areas, Ahu-O-Laka, located in Kaneohe Bay on Oahu, and Kiholo Bay located on the island of Hawaii. Benthic flora at Kiholo was limited to a single algal species but included algae and seagrass at Ahu-O-Laka. Turtle straight carapace length ranged from 38.6 to 59.2 cm, suggesting that the sample set included new recruits to up to 12-year residents. Fatty acid data were analyzed using principal components analysis (PCA). PC1 accounted for over 50% of the variance. Turtles were generally delineated along PC1 by the length of time on benthic foraging grounds, with high (>0.75) negative loadings for the fatty acids 22:6n-3, 7M7H, t16:1n-10, 15:0, and 17:0 associated with relatively new recruits (suggesting a pelagic dietary source for these fatty acids) and high positive loadings for 12:0 and 14:0 associated with long-term residents. PC2 separated turtles primarily by capture location, with high positive loadings for 18:2n-6 and 18:3n-3 [the primary seagrass polyunsaturated fatty acids] associated with the Ahu-O-Laka turtles. Fatty acid profiles of turtles from both locations differed substantially from those of their benthic diets, suggesting considerable modification of dietary fatty acids and de novo biosynthesis.