An elaboration on the syn-anti proton donor concept of glycoside hydrolases: electrostatic stabilisation of the transition state as a general strategy

FEBS Lett. 2005 Jan 17;579(2):302-12. doi: 10.1016/j.febslet.2004.12.021.

Abstract

An in silico survey of all known 3D-structures of glycoside hydrolases that contain a ligand in the -1 subsite is presented. A recurrent crucial positioning of active site residues indicates a common general strategy for electrostatic stabilisation directed to the carbohydrate's ring-oxygen at the transition state. This is substantially different depending on whether the enzyme's proton donor is syn or anti positioned versus the substrate. A comprehensive list of enzymes belonging to 42 different families is given and selected examples are described. An implication for an early evolution scenario of glycoside hydrolases is discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Computational Biology
  • Glycoside Hydrolases / chemistry*
  • Glycoside Hydrolases / classification
  • Humans
  • Models, Chemical
  • Models, Molecular
  • Protein Structure, Quaternary
  • Protons
  • Static Electricity

Substances

  • Protons
  • Glycoside Hydrolases