The CDR3 regions of an immunodominant T cell receptor dictate the 'energetic landscape' of peptide-MHC recognition

Nat Immunol. 2005 Feb;6(2):171-80. doi: 10.1038/ni1155. Epub 2005 Jan 9.

Abstract

The energetic bases of T cell recognition are unclear. Here, we studied the 'energetic landscape' of peptide-major histocompatibility complex (pMHC) recognition by an immunodominant alphabeta T cell receptor (TCR). We quantified and evaluated the effect of natural and systematic substitutions in the complementarity-determining region (CDR) loops on ligand binding in the context of the structural detail of each component of the immunodominant TCR-pMHC complex. The CDR1 and CDR2 loops contributed minimal energy through direct recognition of the antigen and instead had a chief function in stabilizing the ligated CDR3 loops. The underlying energetic basis for recognition lay in the CDR3 loops. Therefore the energetic burden of the CDR loops in the TCR-pMHC interaction is variable among TCRs, reflecting the inherent adaptability of the TCR in ligating different ligands.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cells, Cultured
  • Complementarity Determining Regions / chemistry
  • Complementarity Determining Regions / genetics
  • Complementarity Determining Regions / immunology*
  • Complementarity Determining Regions / metabolism*
  • Histocompatibility Antigens / chemistry
  • Histocompatibility Antigens / immunology*
  • Humans
  • Kinetics
  • Ligands
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation / genetics
  • Peptides / chemistry
  • Peptides / immunology*
  • Protein Structure, Tertiary
  • Receptors, Antigen, T-Cell / chemistry*
  • Receptors, Antigen, T-Cell / genetics
  • Receptors, Antigen, T-Cell / immunology*
  • Receptors, Antigen, T-Cell / metabolism
  • Surface Plasmon Resonance
  • Thermodynamics

Substances

  • Complementarity Determining Regions
  • Histocompatibility Antigens
  • Ligands
  • Peptides
  • Receptors, Antigen, T-Cell