Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough

Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):1943-1949. doi: 10.1099/ijs.0.03007-0.

Abstract

A novel piezotolerant, mesophilic, facultatively anaerobic, organotrophic, polarly flagellated bacterium (strain LT13a(T)) was isolated from a deep sediment layer in the Nankai Trough (Leg 190, Ocean Drilling Program) off the coast of Japan. This organism used a wide range of organic substrates as sole carbon and energy sources: pyruvate, glutamate, succinate, fumarate, lactate, citrate, peptone and tryptone. Oxygen, nitrate, fumarate, ferric iron and cystine were used as electron acceptors. Maximal growth rates were observed at a hydrostatic pressure of 10 MPa. Hydrostatic pressure for growth was in the range 0.1-50 MPa. Predominant cellular fatty acids were 16 : 1omega7c, 15 : 0 iso, 16 : 0 and 13 : 0 iso. The G+C content of the DNA was 44.9 mol%. On the basis of 16S rRNA gene sequences, strain LT13a(T) was shown to belong to the gamma-Proteobacteria, being closely related to Shewanella putrefaciens (98 %), Shewanella oneidensis (97 %) and Shewanella baltica (96 %). Levels of DNA homology between strain LT13a(T) and S. putrefaciens, S. oneidensis and S. baltica were <20 %, indicating that strain LT13a(T) represents a novel species. Genetic evidence and phenotypic characteristics showed that isolate LT13a(T) constitutes a novel species of the genus Shewanella. Because of the deep origin of the strain, the name Shewanella profunda sp. nov. is proposed, with LT13a(T) (=DSM 15900(T)=JCM 12080(T)) as the type strain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anaerobiosis
  • Base Composition
  • Cystine / metabolism
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Fatty Acids / analysis
  • Fatty Acids / isolation & purification
  • Ferric Compounds / metabolism
  • Flagella
  • Fumarates / metabolism
  • Genes, rRNA
  • Geologic Sediments / microbiology*
  • Hydrostatic Pressure
  • Japan
  • Molecular Sequence Data
  • Nitrates / metabolism
  • Nucleic Acid Hybridization
  • Organic Chemicals / metabolism
  • Oxygen / metabolism
  • Pacific Ocean
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Shewanella / classification*
  • Shewanella / cytology
  • Shewanella / isolation & purification*
  • Shewanella / physiology
  • Temperature
  • Water Microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Ferric Compounds
  • Fumarates
  • Nitrates
  • Organic Chemicals
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Cystine
  • fumaric acid
  • Oxygen

Associated data

  • GENBANK/AY445591