Effects of the C4'-oxidized abasic site on replication in Escherichia coli. An unusually large deletion is induced by a small lesion

Biochemistry. 2004 Nov 2;43(43):13621-7. doi: 10.1021/bi048337r.

Abstract

The C4'-oxidized abasic site (C4-AP) is produced in DNA as a result of oxidative stress by a variety of agents. For instance, the lesion accounts for approximately 40% of the DNA damage produced by the antitumor antibiotic bleomycin. The effect of C4-AP on DNA replication in Escherichia coli was determined using the restriction endonuclease and postlabeling (REAP) method. Three-nucleotide deletion products are the sole products observed following replication of plasmids containing C4-AP under SOS conditions in wild-type cells. Full-length products are formed in varying amounts depending upon the local sequence in wild-type cells under non-SOS-induced conditions. The "A-rule" is followed for the formation of substitution products. C4-AP is the first example of a DNA lesion that produces significant levels of three-nucleotide deletions in a variety of sequence contexts. Experiments carried out in cells lacking specific polymerases reveal that formation of three-nucleotide deletion products results from a coordinated effort involving pol II and pol IV. This is the first example in which these SOS inducible polymerases are shown to work in concert during lesion bypass. Three-nucleotide deletions are not observed during the replication of other abasic lesions, and are rarely produced by bulky adducts. The effect of C4-AP on DNA replication suggests a significant role for this lesion in the cytotoxicity of bleomycin. Formation of the C4-AP lesion may also be responsible for the formation of mutant proteins containing single-amino acid deletions that exhibit altered phenotypes.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Apurinic Acid / chemistry*
  • Base Sequence
  • DNA Damage*
  • DNA Replication* / radiation effects
  • DNA, Bacterial / chemistry*
  • DNA, Bacterial / radiation effects
  • Escherichia coli / chemistry*
  • Escherichia coli / genetics*
  • Escherichia coli / radiation effects
  • Hot Temperature
  • Nucleic Acid Heteroduplexes / chemistry
  • Nucleic Acid Heteroduplexes / radiation effects
  • Oligonucleotides / chemical synthesis
  • Oligonucleotides / genetics
  • Oligonucleotides / radiation effects
  • Plasmids
  • Sequence Deletion*
  • Ultraviolet Rays

Substances

  • DNA, Bacterial
  • Nucleic Acid Heteroduplexes
  • Oligonucleotides
  • Apurinic Acid