Combing DNA on CTAB-coated surfaces

Biophys Chem. 2004 Dec 1;112(1):27-33. doi: 10.1016/j.bpc.2004.06.011.

Abstract

A fluorescence microscope (FM) coupled with an intensified charge-coupled device (ICCD) camera was used to investigate the combing of DNA on cetyltrimethyl ammonium bromide (CTAB)-coated glass surfaces. DNA molecules can be combed uniform and straight on CTAB-coated surfaces. Different combing characteristics at different pH values were found. At lower pH (ca. 5.5), DNA molecules were stretched 30% longer than the unextended and DNA extremities bound with CTAB-coated surfaces via hydrophobic interaction. At high pH values (e.g., 6.4 and 6.5), DNA molecules were extended about 10% longer and DNA extremities bound with CTAB-coated surfaces via electrostatic attraction. At pH 6.0, DNA molecules could be extended 30% longer on 0.2-mM CTAB-coated surfaces. CTAB cationic surfactant has both a hydrophobic motif and a positively charged group. So, CTAB-coated surfaces can bind DNA extremities via hydrophobic effect or electrostatic attraction at different pH values. It was also found that combing of DNA on CTAB-coated surfaces is reversible. The number of DNA base pairs binding to CTAB-coated surfaces was calculated.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage lambda / genetics*
  • Binding Sites
  • Cations / chemistry
  • Cations / metabolism
  • Cetrimonium
  • Cetrimonium Compounds / chemistry
  • Cetrimonium Compounds / metabolism*
  • DNA / chemistry*
  • DNA / metabolism*
  • Hydrogen-Ion Concentration
  • Microscopy, Fluorescence
  • Surface Properties
  • Surface-Active Agents / chemistry
  • Surface-Active Agents / metabolism*

Substances

  • Cations
  • Cetrimonium Compounds
  • Surface-Active Agents
  • DNA
  • Cetrimonium