The coenzyme specificity of Candida tenuis xylose reductase (AKR2B5) explored by site-directed mutagenesis and X-ray crystallography

Biochem J. 2005 Jan 1;385(Pt 1):75-83. doi: 10.1042/BJ20040363.

Abstract

CtXR (xylose reductase from the yeast Candida tenuis; AKR2B5) can utilize NADPH or NADH as co-substrate for the reduction of D-xylose into xylitol, NADPH being preferred approx. 33-fold. X-ray structures of CtXR bound to NADP+ and NAD+ have revealed two different protein conformations capable of accommodating the presence or absence of the coenzyme 2'-phosphate group. Here we have used site-directed mutagenesis to replace interactions specific to the enzyme-NADP+ complex with the aim of engineering the co-substrate-dependent conformational switch towards improved NADH selectivity. Purified single-site mutants K274R (Lys274-->Arg), K274M, K274G, S275A, N276D, R280H and the double mutant K274R-N276D were characterized by steady-state kinetic analysis of enzymic D-xylose reductions with NADH and NADPH at 25 degrees C (pH 7.0). The results reveal between 2- and 193-fold increases in NADH versus NADPH selectivity in the mutants, compared with the wild-type, with only modest alterations of the original NADH-linked xylose specificity and catalytic-centre activity. Catalytic reaction profile analysis demonstrated that all mutations produced parallel effects of similar magnitude on ground-state binding of coenzyme and transition state stabilization. The crystal structure of the double mutant showing the best improvement of coenzyme selectivity versus wild-type and exhibiting a 5-fold preference for NADH over NADPH was determined in a binary complex with NAD+ at 2.2 A resolution.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine / metabolism
  • Aldehyde Reductase / chemistry*
  • Aldehyde Reductase / genetics
  • Aldehyde Reductase / isolation & purification
  • Aldehyde Reductase / metabolism*
  • Candida / enzymology*
  • Candida / genetics
  • Catalysis
  • Crystallography, X-Ray
  • Kinetics
  • Models, Molecular
  • Mutagenesis, Site-Directed / genetics*
  • Mutation / genetics
  • NAD / metabolism*
  • NADP / metabolism*
  • Protein Conformation
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Ribose / metabolism
  • Substrate Specificity
  • Thermodynamics
  • Xylose / metabolism

Substances

  • Recombinant Proteins
  • NAD
  • NADP
  • Ribose
  • Xylose
  • Aldehyde Reductase
  • Adenosine

Associated data

  • PDB/1SM9