Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum

Extremophiles. 2004 Dec;8(6):431-9. doi: 10.1007/s00792-004-0403-6. Epub 2004 Jul 30.

Abstract

Two rod-shaped haloarchaeal strains, A1 and A2, were isolated from a bore core from a salt mine in Austria. The deposition of the salt is thought to have occurred during the Permian period (225-280 million years ago). The 16S rDNA sequences of the strains were 97.1% similar to that of the type species of the genus Halobacterium, which was also determined in this work. Polar lipids consisted of C20-C20 derivatives of phosphatidylglycerol, methylated phosphatidylglycerol phosphate, phosphatidylglycerol sulfate, triglycosyl diether and sulfated tetraglycosyl diether. Optimal salinity for growth was 15-17.5% NaCl; Mg++ was tolerated up to a concentration of 1 M. The DNA-DNA reassociation value of strain A1T was 25% with H. salinarum DSM 3754T and 41% with Halobacterium sp. NRC-1, respectively. Based on these results and other properties, e.g. whole cell protein patterns, menaquinone content and restriction patterns of DNA, strains A1 and A2 are members of a single species, for which we propose the name H. noricense. The type strain is A1 (DSM 15987T, ATCC BAA-852T, NCIMB 13967T). Since we present evidence that Halobacterium sp. NRC-1 is a member of H. salinarum, an emended description of H. salinarum is provided.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Archaeal Proteins / isolation & purification
  • Austria
  • Base Composition
  • Carotenoids / analysis
  • DNA, Archaeal / chemistry
  • DNA, Archaeal / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Genes, Archaeal
  • Geologic Sediments / microbiology*
  • Halobacterium / chemistry
  • Halobacterium / classification
  • Halobacterium / genetics
  • Halobacterium / isolation & purification*
  • Halobacterium salinarum / classification*
  • Halobacterium salinarum / genetics
  • Lipids / analysis
  • Lipids / chemistry
  • Microscopy, Electron, Scanning
  • Phylogeny
  • Plasmids / genetics
  • RNA, Archaeal / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sodium Chloride
  • Species Specificity
  • Terminology as Topic
  • Vitamin K 2 / analysis

Substances

  • Archaeal Proteins
  • DNA, Archaeal
  • DNA, Ribosomal
  • Lipids
  • RNA, Archaeal
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Carotenoids
  • Sodium Chloride