Recently, we reported that by converting olefinic fatty acids to their saturated vicinally 1,2-di-hydroxylated derivatives, abundant ions indicative for hydroxyl group locations are produced by negative electrospray ionization low-energy tandem mass spectrometry, allowing the assignment of the olefinic site in the native fatty acid. In this report the mechanisms whereby the characteristic ions are produced are investigated. The mono-hydroxylated fatty acid, 12-hydroxyoctadecanoic acid, served as a model for the more complex 12,13-dihydroxyoctadecanoic acid, and fragmentation mechanisms accounting for the most abundant product ions generated from their deprotonated molecules are proposed. In general, three different mechanisms are proposed to operate in the formation of the observed product ions: (i) step-wise charge-remote homolytic cleavages, (ii) step-wise charge-proximate homolytic cleavages, and (iii) concerted charge-directed rearrangement reactions involving bond formation(s) and heterolytic cleavages. Support for the proposed mechanisms was achieved by investigating the deuterium- and oxygen-18-labeled isotopomers of both compounds.