Macrocyclic diacylglycerol-bis-lactones as conformationally constrained analogues of diacylglycerol-lactones. Interactions with protein kinase C

J Med Chem. 2004 Jul 29;47(16):4000-7. doi: 10.1021/jm0497747.

Abstract

A series of macrocyclic diacylglycerol (DAG)-bis-lactones were investigated as extreme conformationally constrained analogues of DAG-lactones in order to seek more potent protein kinase C (PKC) ligands with higher binding affinities and less lipophilicity than previous compounds. The additional constraint achieved the desired objective as exemplified by the macrocyclic DAG-bis-lactone 57, which exhibited a 6-fold higher binding affinity for PKCalpha (K(i) = 6.07 nM) than the corresponding nonmacrocyclic 3-alkylidene DAG-lactone 6. A structure-activity relationship (SAR) analysis of the macrocyclic DAG-bis-lactones demonstrated a parabolic relationship between activity and lipophilicity, as well as a predilection for the Z-alkylidene isomers as the preferred ligands. Molecular docking studies revealed that macrocyclic DAG-bis-lactone 57 bound to the C1b domain of PKCalpha exclusively in the sn-1 binding mode in contrast to DAG-lactone 6, which showed both sn-1 and sn-2 binding modes. It is proposed that the high potency displayed by these macrocyclic DAG-bis-lactones results from a set of more favorable hydrogen bonding and hydrophobic interactions with PKCalpha as well as from a reduced entropy penalty due to conformational restriction.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Diglycerides / chemical synthesis*
  • Diglycerides / chemistry
  • Lactones / chemical synthesis*
  • Lactones / chemistry
  • Ligands
  • Models, Molecular
  • Molecular Conformation
  • Protein Binding
  • Protein Kinase C / chemistry*

Substances

  • Diglycerides
  • Lactones
  • Ligands
  • Protein Kinase C