The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass

Science. 2004 Jul 9;305(5681):245-8. doi: 10.1126/science.1098419.

Abstract

Ribonucleotide reductase (RNR) synthesizes the deoxyribonucleotides for DNA synthesis. The R2 protein of normal class I ribonucleotide reductases contains a diiron site that produces a stable tyrosyl free radical, essential for enzymatic activity. Structural and electron paramagnetic resonance studies of R2 from Chlamydia trachomatis reveal a protein lacking a tyrosyl radical site. Instead, the protein yields an iron-coupled radical upon reconstitution. The coordinating structure of the diiron site is similar to that of diiron oxidases/monoxygenases and supports a role for this radical in the RNR mechanism. The specific ligand pattern in the C. trachomatis R2 metal site characterizes a new group of R2 proteins that so far has been found in eight organisms, three of which are human pathogens.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Chlamydia trachomatis / enzymology*
  • Crystallography, X-Ray
  • Electron Spin Resonance Spectroscopy
  • Free Radicals
  • Hydrogen Bonding
  • Iron / analysis
  • Ligands
  • Models, Molecular
  • Molecular Sequence Data
  • Oxidation-Reduction
  • Oxygen / metabolism
  • Protein Folding
  • Protein Structure, Secondary
  • Ribonucleotide Reductases / chemistry*
  • Ribonucleotide Reductases / classification
  • Ribonucleotide Reductases / metabolism
  • Tyrosine / analysis

Substances

  • Free Radicals
  • Ligands
  • Tyrosine
  • Iron
  • Ribonucleotide Reductases
  • ribonucleotide reductase R2 subunit
  • Oxygen