Structural analysis and identification of cis-elements of rice osRACD gene

Acta Biochim Biophys Sin (Shanghai). 2004 Mar;36(3):191-8. doi: 10.1093/abbs/36.3.191.

Abstract

The osRACD gene correlated with fertility transformation in the photoperiod sensitive genic male sterile rice (PGMR), Nongken 58S, encoded a rice (Oryza sativa L. ssp. japonica) small GTPase belonging to the Rac/Rho family. Inverse PCR was performed to amplify a fragment about 1.4 kb in 5' upstream region of the osRACD promoter. Deletion mutation and gel mobility shift assay characterized two fragments (-799 to -686 nt, and -686 to -431 nt) in the osRACD promoter that could be involved in its transcriptional regulation. When these two deletion fragments were used as probe respectively, a retarded band appeared in the nuclear extracts of fertile 58S rice under short day (58S-SD). Whereas no retarded band was shown in the nuclear extracts of sterile 58S rice under long day (58S-LD). Competition assay indicated that the factors in the retarded bands binding to these two fragments were the same trans-acting factor (termed rice factor, RF). The binding affinity of RF was affected by phosphorylation and was higher in SD-growth rice than that of LD-growth rice.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics
  • Base Sequence
  • Fertility / genetics
  • GTP-Binding Proteins / chemistry*
  • GTP-Binding Proteins / genetics*
  • GTP-Binding Proteins / metabolism
  • Molecular Sequence Data
  • Oryza / chemistry*
  • Oryza / genetics*
  • Oryza / metabolism
  • Photoperiod
  • Plant Proteins / chemistry
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Promoter Regions, Genetic / genetics*
  • Regulatory Sequences, Nucleic Acid*

Substances

  • 5' Untranslated Regions
  • Plant Proteins
  • GTP-Binding Proteins