Visualizations for taxonomic and phylogenetic trees

Bioinformatics. 2004 Nov 22;20(17):2997-3004. doi: 10.1093/bioinformatics/bth345. Epub 2004 Jun 4.

Abstract

Motivation: Despite substantial efforts to develop and populate the back-ends of biological databases, front-ends to these systems often rely on taxonomic expertise. This research applies techniques from human-computer interaction research to the biodiversity domain.

Results: We developed an interactive node-link tool, TaxonTree, illustrating the value of a carefully designed interaction model, animation, and integrated searching and browsing towards retrieval of biological names and other information. Users tested the tool using a new, large integrated dataset of animal names with phylogenetic-based and classification-based tree structures. These techniques also translated well for a tool, DoubleTree, to allow comparison of trees using coupled interaction. Our approaches will be useful not only for biological data but as general portal interfaces.

Publication types

  • Evaluation Study
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms
  • Animals
  • Classification / methods
  • Computer Graphics*
  • Database Management Systems / classification*
  • Databases, Factual*
  • Information Storage and Retrieval / methods*
  • Phylogeny*
  • Software*
  • User-Computer Interface*