3'-box-dependent processing of human pre-U1 snRNA requires a combination of RNA and protein co-factors

Nucleic Acids Res. 2004 Jun 1;32(10):2987-94. doi: 10.1093/nar/gkh619. Print 2004.

Abstract

Using an in vitro system we have recently shown that the 3' ends of human pre-snRNAs synthesized by RNA polymerase II are produced by RNA processing directed by the snRNA gene-specific 3' box. Towards a complete characterization of this processing reaction we have further investigated the in vitro requirements for proper 3' end formation of pre-U1 snRNA. Here we show that the 5' cap plays a stimulatory role and processing requires creatine phosphate. Our results also indicate that the pre-U1 processing activity is heat sensitive and that an RNA component is required. In addition, the exact sequence adjacent to the 3' box influences the position of the pre-U1 3' end produced in vitro. Interestingly, the processing extract active for 3'-box-dependent processing also contains an activity that converts the 3' end of RNA containing the U1 Sm protein binding site and the 3' terminal stem-loop into the mature form.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Base Sequence
  • Binding Sites
  • Coenzymes / metabolism*
  • Enzyme Stability
  • HeLa Cells
  • Hot Temperature
  • Humans
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phosphocreatine / metabolism*
  • RNA Caps / chemistry
  • RNA Caps / genetics
  • RNA Caps / metabolism
  • RNA Processing, Post-Transcriptional*
  • RNA, Small Nuclear / chemistry
  • RNA, Small Nuclear / genetics*
  • RNA, Small Nuclear / metabolism*
  • Ribonucleoproteins / chemistry
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*

Substances

  • Coenzymes
  • RNA Caps
  • RNA, Small Nuclear
  • Ribonucleoproteins
  • U1 small nuclear RNA
  • Phosphocreatine
  • Adenosine Triphosphate