Molecular epidemiology of outbreaks of viral gastroenteritis in New York State, 1998-1999

Clin Infect Dis. 2004 Apr 15:38 Suppl 3:S303-10. doi: 10.1086/381600.

Abstract

This investigation evaluated the role of Norwalk-like virus (NLV) and other viruses (rotavirus, enteric adenovirus, and enterovirus) in 11 outbreaks of acute nonbacterial gastroenteritis that occurred in multiple settings in a span of 18 months in New York State. To determine the etiology of illness, patients' stool specimens were analyzed with a combination of reverse-transcription polymerase chain reaction (RT-PCR) and nucleotide sequencing, cell culture, and ELISA diagnostic techniques. NLV was detected from all of these outbreaks, with an overall detection rate of 64% (51 of 79) for all specimens tested. Repeated attempts to isolate other viral pathogens were unsuccessful. Phylogenetic analysis of a subset of 27 specimens from these outbreaks showed the presence of both genogroup I and genogroup II NLVs. A spectrum of different nucleotide sequences were detected, demonstrating interoutbreak sequence variation and unrelated infections. NLV is a significant causative agent of diarrhea outbreaks in New York State.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Caliciviridae Infections / epidemiology*
  • Caliciviridae Infections / genetics
  • Disease Outbreaks
  • Enzyme-Linked Immunosorbent Assay
  • Gastroenteritis / epidemiology*
  • Gastroenteritis / genetics
  • Gastroenteritis / virology
  • Genetic Variation
  • Humans
  • Molecular Epidemiology
  • Molecular Sequence Data
  • New York / epidemiology
  • Norovirus* / classification
  • Norovirus* / genetics
  • RNA, Viral / analysis
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Homology, Amino Acid

Substances

  • RNA, Viral