Influence of a 12-nt insertion present in the 3' untranslated region of classical swine fever virus HCLV strain genome on RNA synthesis

Virus Res. 2004 Jun 15;102(2):191-8. doi: 10.1016/j.virusres.2004.01.029.

Abstract

The function of a 12-nt insertion 'CTTTTTTCTTTT' in the 3' untranslated region (3'UTR) of the HCLV strain, a vaccine strain derived from the Shimen strain of classical swine fever virus (CSFV), was examined in vitro. RNA synthesis increased when the 12-nt insertion was deleted from the 3'UTR of the HCLV strain. RNA synthesis also decreased when the 12-nt insertion was introduced into the 3'UTR of the CSFV Shimen, virulent strain. Therefore, the 12-nt insertion present in the 3'UTR of the HCLV strain may be a marker for avirulence. It was also found that the predicted secondary structure of the 3'UTR of the HCLV strain was more stable when the 12-nt insertion was deleted, and that the 3'UTR of Shimen strain was more unstable when the 12-nt insertion was introduced. Replacement of the 12-nt insertion 'CTTTTTTCTTTT' by another 12-nt fragment 'ATTATTATTTAT' in the 3'UTR of HCLV strain facilitated RNA synthesis and stabilized the predicted secondary structure, which was also observed in the 3'UTR of the Shimen strain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions*
  • Base Sequence
  • Classical Swine Fever Virus / genetics*
  • Classical Swine Fever Virus / growth & development*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligoribonucleotides
  • RNA, Viral / biosynthesis*
  • RNA, Viral / genetics
  • RNA-Dependent RNA Polymerase / isolation & purification
  • RNA-Dependent RNA Polymerase / metabolism
  • Sequence Deletion
  • Viral Proteins / isolation & purification
  • Viral Proteins / metabolism
  • Viral Vaccines
  • Virus Replication

Substances

  • 3' Untranslated Regions
  • Oligoribonucleotides
  • RNA, Viral
  • Viral Proteins
  • Viral Vaccines
  • RNA-Dependent RNA Polymerase