Single-stranded DNA bound to bacterial cold-shock proteins: preliminary crystallographic and Raman analysis

Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):755-7. doi: 10.1107/S0907444904002422. Epub 2004 Mar 23.

Abstract

The cold-shock response has been described for several bacterial species. It is characterized by distinct changes in intracellular protein patterns whereby a set of cold-shock-inducible proteins become abundant. The major cold-shock proteins of Bacillus subtilis (Bs-CspB) and Bacillus caldolyticus (Bc-Csp) are small oligonucleotide/oligosaccharide-binding (OB) fold proteins that have been described as binding single-stranded nucleic acids. Bs-CspB (Mr = 7365) and Bc-Csp (Mr = 7333) were crystallized in the presence of the deoxyhexanucleotide (dT)6. Crystals of (dT)6 with Bs-CspB grew in the orthorhombic space group C222(1), with unit-cell parameters a = 49.0, b = 53.2, c = 77.0 A. Crystals with Bc-Csp grew in the primitive orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 74.3, b = 64.9, c = 31.2 A. These crystals diffract to maximal resolutions of 1.78 and 1.29 A, respectively. The presence of protein and DNA in the crystals was demonstrated by Raman spectroscopy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus / chemistry*
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Cloning, Molecular
  • Crystallization*
  • Crystallography, X-Ray
  • DNA, Single-Stranded / chemistry*
  • DNA, Single-Stranded / metabolism
  • Heat-Shock Proteins / chemistry*
  • Heat-Shock Proteins / metabolism
  • Oligodeoxyribonucleotides / chemistry
  • Oligodeoxyribonucleotides / metabolism
  • Spectrum Analysis, Raman

Substances

  • Bacterial Proteins
  • DNA, Single-Stranded
  • Heat-Shock Proteins
  • Oligodeoxyribonucleotides
  • cold shock protein, Bacillus
  • oligo (dT)