Molecular binding behavior of pyridine-2,6-dicarboxamide-bridged bis(beta-cyclodextrin) with oligopeptides: switchable molecular binding mode

Bioconjug Chem. 2004 Mar-Apr;15(2):300-6. doi: 10.1021/bc034230p.

Abstract

Bridged bis(beta-cyclodextrin) 1 with a pyridine-2,6-dicarboxamide linker was synthesized, and its inclusion complexation behavior with some aliphatic oligopeptides was investigated in aqueous buffer solution of pH 2.0 and 7.2 at 25 degrees C by means of circular dichroism, fluorescence, and 2D NMR techniques. The results show that the resulting inclusion complexes of 1 with oligopeptides adopt a cooperative "cyclodextrin-guest-cyclodextrin" sandwich binding mode in a neutral media, but a "guest-linker-cyclodextrin" coinclusion binding mode in an acidic media. These switchable binding modes consequently rationalize the binding ability of bis(beta-cyclodextrin) 1 at different pH values; that is, 1 shows the stronger association with oligopeptides in a neutral media. Because of the simultaneous contributions of hydrophobic, hydrogen bond, and electrostatic interactions, bis(beta-cyclodextrin) 1 affords length-selectivity up to 4.7 for the Gly-Gly/Gly-Gly-Gly pair at pH 2.0 and sequence-selectivity up to 4.2 for the Gly-Leu/Leu-Gly pair at pH 7.2. These phenomena are discussed from the viewpoint of the size-fit concept and the multipoint recognitions between host and guest.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Bridged-Ring Compounds / chemistry
  • Bridged-Ring Compounds / metabolism
  • Carbohydrate Conformation
  • Circular Dichroism / methods
  • Magnetic Resonance Spectroscopy
  • Oligopeptides / chemistry*
  • Oligopeptides / metabolism*
  • Protein Binding
  • Protons
  • Pyridines / chemistry*
  • Pyridines / metabolism*
  • beta-Cyclodextrins / chemistry*
  • beta-Cyclodextrins / metabolism*

Substances

  • Bridged-Ring Compounds
  • Oligopeptides
  • Protons
  • Pyridines
  • beta-Cyclodextrins
  • bis(cyclodextrin-6-yl)2,2'-bipyridine-4,4'-dicarboxylate