Bioavailability prediction based on molecular structure for a diverse series of drugs

Pharm Res. 2004 Jan;21(1):68-82. doi: 10.1023/b:pham.0000012154.09631.26.

Abstract

Purpose: Radial basis function artificial neural networks and theoretical descriptors were used to develop a quantitative structure-pharmacokinetic relationship for structurally diverse drug compounds.

Methods: Human bioavailability values were taken from the literature and descriptors were generated from the drug structures. All models were trained with 137 compounds and tested with a further 15, after which they were evaluated for predictive ability with an additional 15 compounds.

Results: The final model possessed a 10-31-1 topology and training and testing correlation coefficients were 0.736 and 0.897, respectively. Predictions for independent compounds agreed well with experimental literature values, especially for compounds that were well absorbed and/or had high observed bioavailability. Important theoretical descriptors included solubility parameters, electronic descriptors, and topological indices.

Conclusions: Useful information regarding drug bioavailability was gained from drug structure alone, reducing the need for experimental methods in drug development.

Publication types

  • Validation Study

MeSH terms

  • Analysis of Variance
  • Biological Availability
  • Computational Biology / methods
  • Data Interpretation, Statistical
  • Humans
  • Molecular Structure
  • Neural Networks, Computer*
  • Pharmaceutical Preparations / chemistry*
  • Pharmaceutical Preparations / metabolism*
  • Predictive Value of Tests
  • Quantitative Structure-Activity Relationship*
  • Sensitivity and Specificity
  • Statistics, Nonparametric

Substances

  • Pharmaceutical Preparations