Mechanism of dioxygen activation in 2-oxoglutarate-dependent enzymes: a hybrid DFT study

Chemistry. 2004 Feb 20;10(4):1031-41. doi: 10.1002/chem.200305306.

Abstract

The reaction mechanism for dioxygen activation in 2-oxoglutarate-dependent enzymes has been studied by means of hybrid density functional theory. The results reported here support a mechanism in which all chemical transformations take place on a quintet potential-energy surface. More specifically, the activated dioxygen species attacks the carbonyl group of the co-substrate producing the Fe(II)-persuccinate-CO(2) complex, which readily releases the carbon dioxide molecule. The step in which the Fe(II)-peracid-CO(2) complex is formed is found to be rate-limiting and irreversible. Subsequent heterolysis of the Obond;O bond in the Fe(II)-persuccinate complex proceeds in two one-electron steps and produces the high-valent iron-oxo species Fe(IV)dbond;O, which is most likely to be responsible for oxidative reactions catalyzed by 2-oxoglutarate-dependent enzymes. The concerted pathway for simultaneous Obond;O and Cbond;C bond cleavage on the septet potential-energy surface is found to be less favorable. The relative stability of different forms of the active iron-oxo species is assessed, and the quintet five-coordinate complex is found to be most stable.

MeSH terms

  • Binding Sites
  • Catalysis
  • Enzyme Activation
  • Heme / metabolism
  • Ketoglutaric Acids / chemistry*
  • Mathematical Computing
  • Oxygen / metabolism*
  • Oxygenases / chemistry*
  • Oxygenases / metabolism*
  • Reactive Oxygen Species / metabolism

Substances

  • Ketoglutaric Acids
  • Reactive Oxygen Species
  • Heme
  • Oxygenases
  • Oxygen