Modifications in root-shoot relationships induced by graft incompatibility were studied in peach/plum graft combinations by means of carbohydrate and nitrogen analyses and isotope labeling. Mobilization of stored carbon, phloem transport of carbon, and mobilization, assimilation and distribution of nitrogen were studied in one compatible peach/plum graft (Prunus persica L. Batsch cv. springtime grafted on Prunus cerasifera L. Ehrh cv. myrobalan P 2032) and one incompatible graft (Prunus persica L. Batsch cv. Springtime grafted on Prunus cerasifera L. Ehrh cv. myrobalan P 18) for 89 days after grafting. Carbon and nitrogen reserves were mobilized in the rootstock in both graft combinations during the first 78 days following grafting. After that, sorbitol concentration was lower in the roots of the incompatible graft than in the roots of the compatible graft, whereas soluble sugars and starch accumulated in the peach scion of the incompatible graft. In both graft types, carbon was allocated mainly to the scion. Labeling with (13)CO(2) from 78 to 81 days after grafting showed that carbon partitioning among the different plant organs was only slightly affected by graft incompatibility. Carbohydrate concentrations provided indirect evidence that carbon transfer to the roots was hindered in the incompatible graft. Labeling with (15)NO(3) showed that nitrogen distribution and the rate of nitrogen assimilation were similar in the two graft combinations from 57 to 78 days after grafting. Nitrogen assimilation in the incompatible graft ceased 78 days after grafting, whereas it continued in the compatible graft.