Recently, we described the use of a DNA aptamer as a new target-specific chiral stationary phase (CSP) for the separation of oligopeptide enantiomers (Michaud, M.; Jourdan, E.; Villet, A.; Ravel, A.; Grosset, C.; Peyrin, E. J. Am. Chem. Soc. 2003, 125, 8672). However, from a practical point of view, it was fundamental to extend the applicability of such target-specific aptamer CSP to the resolution of small (bioactive) molecule enantiomers. In this paper, immobilized DNA aptamers specifically selected against D-adenosine and L-tyrosinamide were used to resolve the enantiomers by HPLC, using microbore columns. At 20 degrees C, the adenosine enantioseparation was similar to that classically reported with imprinted CSPs (approximately 3.5) while a very high enantioselectivity was observed for the tyrosinamide enantiomers (the nontarget enantiomer was essentially nonretained on the CSP). The influence of temperature on solute binding and chiral discrimination was analyzed. The binding enthalpic contributions were determined from linear van't Hoff plots. Very large DeltaH values were obtained for the target enantiomers (-71.4 +/- 0.7 kJ/mol for D-adenosine and -139.4 +/- 2.0 kJ/mol for L-tyrosinamide). Such values were consistent with the formation of a tight complex between these analytes and the aptamer CSPs. This work demonstrates that target-specific aptamer CSPs constitute a powerful tool for the resolution of small (bioactive) molecule enantiomers.