Determination of queuosine derivatives by reverse-phase liquid chromatography for the hypomodification study of Q-bearing tRNAs from various mammal liver cells

J Chromatogr B Analyt Technol Biomed Life Sci. 2004 Mar 5;801(2):237-47. doi: 10.1016/j.jchromb.2003.11.022.

Abstract

Three queuosine derivatives (Q-derivatives) have been found at position 34 of four mammalian so-called Q-tRNAs: queuosine (Q) in tRNA(Asn) and tRNA(His), mannosyl-queuosine (manQ) in tRNA(Asp), and galactosyl-queuosine (galQ) in tRNA(Tyr). An analytical procedure based on the combined means of purified tRNA isolation from liver cells and ribonucleoside analysis by reverse-phase high performance liquid chromatography coupled with real-time UV-spectrometry (RPLC-UV) was developed for the quantitative analysis of the three Q-derivatives present in total tRNA from liver tissues and liver cell cultures. Using this analytical procedure, the rates of Q-tRNA modification were studied in total tRNAs from various mammalian hepatic cells. Our results show that the four Q-tRNAs are fully modified in liver tissues from adult mammals, regardless of the mammal species. However, a lack in the Q-modification level was observed in Q-tRNAs from newborn rat liver, as well in Q-tRNAs from normal rat liver cell cultures growing in a low queuine content medium, and from a rat hepatoma cell line. It is noteworthy that in all cases of Q-tRNA hypomodification, our analytical procedure showed that tRNA(Asp) is always the least affected by the hypomodification. The biological significance of this phenomenon is discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cells, Cultured
  • Chickens
  • Chromatography, High Pressure Liquid*
  • Hepatocytes / chemistry
  • Liver / chemistry*
  • Liver Neoplasms, Experimental
  • Nucleoside Q / analogs & derivatives*
  • Nucleoside Q / analysis*
  • RNA, Transfer / chemistry*
  • RNA, Transfer / isolation & purification
  • RNA, Transfer, Amino Acyl / chemistry
  • RNA, Transfer, Asn / chemistry
  • Rats
  • Tumor Cells, Cultured

Substances

  • RNA, Transfer, Amino Acyl
  • RNA, Transfer, Asn
  • Nucleoside Q
  • RNA, Transfer