Cloning, purification, crystallization and preliminary crystallographic studies of Bradyrhizobium fucosyltransferase NodZ

Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):344-6. doi: 10.1107/S0907444903027227. Epub 2004 Jan 23.

Abstract

The alpha-1,6-fucosyltransferase NodZ from Bradyrhizobium sp. WM9 (Lupinus), composed of 325 amino acids with a molecular weight of 37 kDa, has been cloned, expressed and purified. Protein crystals suitable for X-ray diffraction were obtained under optimized crystallization conditions using ammonium dihydrogen phosphate as a precipitant. The crystals are hexagonal and belong to space group P6(1)22 or P6(5)22, with unit-cell parameters a = 125.5, c = 95.6 A, and contain 56.8% solvent and a single protein molecule in the asymmetric unit. Native data were collected to 2.85 A using synchrotron radiation and cryogenic conditions. The native crystals were soaked in a mother-liquor solution containing 2.5 mM [Ta(6)Br(12)](2+) cluster for derivatization and SAD data were collected to 3.4 A at the tantalum L(III) absorption peak.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bradyrhizobium / enzymology*
  • Cloning, Molecular
  • Fucosyltransferases / chemistry*
  • Phosphates / chemistry
  • Quaternary Ammonium Compounds / chemistry
  • Synchrotrons
  • Temperature
  • X-Ray Diffraction

Substances

  • Bacterial Proteins
  • Phosphates
  • Quaternary Ammonium Compounds
  • Fucosyltransferases
  • NodZ protein, bacteria