Nucleotide sequences of two Korean isolates of Cucumber green mottle mosaic virus

Mol Cells. 2003 Dec 31;16(3):407-12.

Abstract

The nucleotide sequences of the genomic RNAs of Cucumber green mottle mosaic virus Korean watermelon isolate (CGMMV-KW) and Korean oriental melon isolate (CGMMV-KOM) were determined and compared to the sequences of other tobamoviruses including CGMMV strains W and SH. Each CGMMV isolate had a genome of 6,424 nucleotides. Each also had 60 and 176 nucleotides of 5' and 3' untranslated regions (UTRs), respectively, and four open reading frames (ORF1-4). ORFs 1 to 4 encode proteins of 129, 186, 29, and 17.4 kDa, respectively. The nucleotide and deduced amino acid sequences of CGMMV-KOM and CGMMV-KW were more than 98.3% identical. When compared to other CGMMV strains in a phylogenetic analysis they were found to form a distinct virus clade, and were more distantly related to other tobamoviruses (23.5-56.7% identity).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cucumis melo / genetics
  • Cucumis melo / virology
  • Cucumis sativus / virology*
  • Korea
  • Phylogeny
  • Sequence Analysis, DNA
  • Sequence Analysis, Protein
  • Tobamovirus / genetics*