Theory and simulation of water permeation in aquaporin-1

Biophys J. 2004 Jan;86(1 Pt 1):50-7. doi: 10.1016/S0006-3495(04)74082-5.

Abstract

We discuss the difference between osmotic permeability pf and diffusion permeability pd of single-file water channels and demonstrate that the pf/pd ratio corresponds to the number of effective steps a water molecule needs to take to permeate a channel. While pd can be directly obtained from equilibrium molecular dynamics simulations, pf can be best determined from simulations in which a chemical potential difference of water has been established on the two sides of the channel. In light of this, we suggest a method to induce in molecular dynamics simulations a hydrostatic pressure difference across the membrane, from which pf can be measured. Simulations using this method are performed on aquaporin-1 channels in a lipid bilayer, resulting in a calculated pf of 7.1 x 10(-14) cm(3)/s, which is in close agreement with observation. Using a previously determined pd value, we conclude that pf/pd for aquaporin-1 measures approximately 12. This number is explained in terms of channel architecture and conduction mechanism.

Publication types

  • Comparative Study
  • Evaluation Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.
  • Validation Study

MeSH terms

  • Aquaporin 1
  • Aquaporins / chemistry*
  • Binding Sites
  • Computer Simulation
  • Diffusion
  • Lipid Bilayers / chemistry*
  • Macromolecular Substances
  • Models, Chemical*
  • Models, Molecular*
  • Osmotic Pressure
  • Permeability
  • Phosphatidylethanolamines / chemistry*
  • Protein Binding
  • Protein Conformation
  • Water / chemistry*

Substances

  • Aquaporins
  • Lipid Bilayers
  • Macromolecular Substances
  • Phosphatidylethanolamines
  • Water
  • 1-palmitoyl-2-oleoylphosphatidylethanolamine
  • Aquaporin 1