Freshwater drainage canals in South Florida are utilized to manage water in agricultural, urban, and water conservation areas and, as a result, collect urban and agricultural storm runoff that is discharged into the Atlantic Ocean and Gulf of Mexico. Pesticides in this runoff may be toxic to the biota inhabiting these waters. This study evaluated the effects of contaminants in South Florida canals draining into Biscayne Bay on the estuarine grass shrimp (Palaemonetes intermedius), a representative invertebrate species. Results of surface water analysis for pesticides indicated that eight pesticides out of 52 analyzed were detected. The herbicide metolachlor was found at all nine sites in the five canals sampled at concentrations up to 119 ng/L. Atrazine was detected at seven sites at concentrations up to 29 ng/L. Three organophosphate insecticides (chlorpyrifos, malathion, diazinon) were detected at three sites in two canals (Military and North). Grass shrimp from these three sites showed significantly reduced levels of the acetylcholinesterase enzyme as compared to control shrimp. These two canals are similar in the land use areas drained--urban and suburban and agriculture. The results suggest that monitoring organisms for AChE levels can be a means of detecting exposure to organophosphorus pesticide contamination.