High throughput detection of small genomic insertions or deletions by Pyrosequencing

Biotechnol Lett. 2003 Oct;25(20):1703-7. doi: 10.1023/a:1026090218031.

Abstract

Small insertions or deletions of nucleotides are common polymorphic variations in the human genome and can result in a predisposition to disease. However, high throughput methods for detecting these variations are limited. This report describes a method to detect this variation based on sequencing the boundaries of nucleotide alterations using the Pyrosequencing technique. This method can optimally detect up to 100 base pair nucleotide insertions and deletions, and also complicated genomic rearrangements.

Publication types

  • Comparative Study
  • Evaluation Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.
  • Validation Study

MeSH terms

  • Algorithms*
  • Base Pair Mismatch / genetics*
  • Base Sequence
  • Chondroitin Sulfate Proteoglycans / genetics
  • DNA Mutational Analysis / methods*
  • Fibrillins
  • Gene Deletion*
  • Gene Expression Profiling / methods*
  • Gene Frequency / genetics
  • Genetic Testing
  • Genome
  • Lectins, C-Type
  • Microfilament Proteins / genetics
  • Molecular Sequence Data
  • Polymerase Chain Reaction / methods*
  • Polymorphism, Single Nucleotide / genetics
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Sequence Analysis, DNA / methods*
  • Software*
  • Versicans

Substances

  • Chondroitin Sulfate Proteoglycans
  • Fibrillins
  • Lectins, C-Type
  • Microfilament Proteins
  • VCAN protein, human
  • Versicans