Eukaryotic RNase P: role of RNA and protein subunits of a primordial catalytic ribonucleoprotein in RNA-based catalysis

Mol Cell. 2003 Oct;12(4):925-35. doi: 10.1016/s1097-2765(03)00357-5.

Abstract

Ribonuclease P (RNase P) is an essential enzyme that processes the 5' leader sequence of precursor tRNA. Eubacterial RNase P is an RNA enzyme, while its eukaryotic counterpart acts as catalytic ribonucleoprotein, consisting of RNA and numerous protein subunits. To study the latter form, we reconstitute human RNase P activity, demonstrating that the subunits H1 RNA, Rpp21, and Rpp29 are sufficient for 5' cleavage of precursor tRNA. The reconstituted RNase P precisely delineates its cleavage sites in various substrates and hydrolyzes the phosphodiester bond. Rpp21 and Rpp29 facilitate catalysis by H1 RNA, which seems to require a phylogenetically conserved pseudoknot structure for function. Unexpectedly, Rpp29 forms a catalytic complex with M1 RNA of E. coli RNase P. The results uncover the core components of eukaryotic RNase P, reveal its evolutionary origin in translation, and provide a paradigm for studying RNA-based catalysis by other nuclear and nucleolar ribonucleoprotein enzymes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Catalysis
  • Catalytic Domain / genetics
  • Eukaryotic Cells / enzymology*
  • Evolution, Molecular
  • Humans
  • Phylogeny
  • Prokaryotic Cells / enzymology
  • Protein Biosynthesis / genetics
  • Protein Structure, Tertiary / genetics
  • Protein Subunits / genetics
  • Protein Subunits / metabolism*
  • RNA, Catalytic / genetics
  • RNA, Catalytic / metabolism*
  • RNA, Transfer / metabolism
  • Ribonuclease P / genetics
  • Ribonuclease P / metabolism*

Substances

  • Protein Subunits
  • RNA, Catalytic
  • RNA, Transfer
  • Ribonuclease P