Promoter analysis of the human translation termination factor 1 gene

Gene. 2003 Oct 16:316:91-101. doi: 10.1016/s0378-1119(03)00742-x.

Abstract

The human translation termination factor 1 (ETF1) gene encodes a class-1 release factor, eRF1, which catalyses termination of protein synthesis at all three stop codons. In this report, we describe the functional organization of the 5'-region of the gene. Primer extension and ribonuclease protection mapping revealed three transcription start sites clustered within approximately 10 bp. DNase I-hypersensitive site analysis identified five hypersensitive sites, one of which was located downstream of the initiation start sites. We used transient expression assays to define the 5'-regulating regions and in vivo and in vitro footprinting analysis to identify potential cis-acting regulatory elements. A basal promoter, spanning nucleotides -210/+117, contained no TATA box but a putative initiator element (Inr) and multiple potential Sp1/Sp3 binding sites, and thus displayed some of the features of a housekeeping gene. An additional upstream promoter containing positive and negative regulatory elements also regulated ETF1 gene expression. Real-time quantitative RT-PCR analysis showed tissue-specific expression of ETF1 transcripts in mouse tissues. Our results are suggestive of a constitutive expression of the human ETF1 gene but with possible cell- and tissue-specific regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Flanking Region / genetics
  • Animals
  • Base Sequence
  • Binding Sites / genetics
  • Blotting, Southern
  • COS Cells
  • Chlorocebus aethiops
  • DNA Footprinting
  • DNA Methylation
  • Gene Expression
  • HeLa Cells
  • Humans
  • Luciferases / genetics
  • Luciferases / metabolism
  • Male
  • Mice
  • Molecular Sequence Data
  • Peptide Termination Factors / genetics*
  • Promoter Regions, Genetic / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Transcription Initiation Site
  • Transcription, Genetic
  • Transfection

Substances

  • ETF1 protein, human
  • Etf1 protein, mouse
  • Peptide Termination Factors
  • RNA, Messenger
  • Recombinant Fusion Proteins
  • Luciferases