A new and sensitive Co-operational polymerase chain reaction for rapid detection of Ralstonia solanacearum in water

J Microbiol Methods. 2003 Oct;55(1):257-72. doi: 10.1016/s0167-7012(03)00161-1.

Abstract

Three primers from 16S rRNA were successfully assayed simultaneously in one reaction for sensitive detection of Ralstonia solanacearum in watercourses. The protocol is a modification of the Co-operational polymerase chain reaction (Co-PCR), which allows the simultaneous and co-operational action of the primers. It specifically amplified R. solanacearum strains belonging to biovars 1, 2 and 4. No products were obtained from any of the 162 unidentified isolates from river water. The sensitivity of the assay was <1 cfu/ml as determined by analysis of heat-treated water samples spiked with R. solanacearum, also containing indigenous microbiota up to 10(5) cfu/ml. The developed Co-PCR assay was more sensitive than other standard PCR assays in the analysis of 51 Spanish environmental water samples. Namely 31.3% of the samples were positive using the newly developed assay, whereas 13.7% or less positive samples were found with the other protocols. The Co-PCR improves the detection sensitivity of R. solanacearum and provides an important tool for its routine detection from environmental water samples and for epidemiological studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Colorimetry
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Polymerase Chain Reaction / methods*
  • Ralstonia solanacearum / isolation & purification*
  • Sensitivity and Specificity
  • Water Microbiology*