Amino acid substitution in the C-terminal arm domain of HU-2 results in an enhanced affinity for DNA

Gene. 1992 Nov 2;121(1):121-6. doi: 10.1016/0378-1119(92)90169-p.

Abstract

Three mutants of the Escherichia coli hupA gene, encoding the HU-2 protein, were constructed by synthetic oligodeoxyribonucleotide-directed, site-specific mutagenesis on M13mp18 vectors. The resulting HupAN10, HupAN11 and HupAN12 proteins contained Thr59-->Lys, Gln64-->Lys and Asn53-->Arg substitutions, respectively. These amino acid (aa) changes increased the positive charge of the N-terminal half of the two-strand, antiparallel beta-ribbon of the arm structure, which is believed to be a domain for DNA binding. The three mutant proteins bound to DNA more tightly than wild-type HU-2, and their affinities for DNA increased in the order of HupAN10, HupAN11, HupAN12. The mutant proteins showed a slightly increased HU activity for supporting Mu phage development. A mutant HU-2 protein with increased basicity, but with an altered aa sequence in the arm region due to a frameshift mutation, was also constructed. This mutant protein showed a reduced affinity to DNA and was unable to support Mu growth, suggesting that a unique aa sequence of the arm domain, rather than mere basicity of this domain, is required for efficient binding to DNA.

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / genetics
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Bacteriophage mu / growth & development
  • Base Sequence
  • Blotting, Western
  • DNA, Bacterial / metabolism*
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / metabolism
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Plasmids
  • Protein Binding

Substances

  • Amino Acids
  • Bacterial Proteins
  • DNA, Bacterial
  • DNA-Binding Proteins
  • histone-like protein HU, bacteria