During the last 1000 years, massive deforestation events have occurred in Flanders (the northern part of Belgium) and the remaining forests have become very isolated patches. It is expected that organisms bound to these patchy forest habitats and with limited dispersal capacities will likely experience strong effects of genetic drift. One such organism is the spider Coelotes terrestris. Allozyme data suggested that 10 Flemish populations of this spider showed little genetic variation, as only one out of 20 loci was polymorphic (phosphoglucose isomerase). In view of this result, we used random amplified polymorphic DNA (RAPD) markers to test whether this lack of allozyme diversity is an inherent feature of the populations and/or species studied or whether it rather reflects a characteristic of the markers and/or methods used. Since the RAPD data revealed a substantial amount of genetic diversity in the same 10 populations, our results suggest that the latter is true. Furthermore, the RAPD data agree with the expectations for an organism with low dispersal capacities that has lived in isolated forest patches for at least 200 generations. Supplemented with the results of other techniques and studies, these findings might be of importance for the future conservation of this spider species in Flanders.