Crystallization of restriction endonuclease SfiI in complex with DNA

Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1493-5. doi: 10.1107/s0907444903011910. Epub 2003 Jul 23.

Abstract

The SfiI endonuclease from Streptomyces fimbriatus (EC 3.1.21.4) is a tetrameric enzyme that binds simultaneously to two recognition sites and cleaves both sites concertedly. It serves as a good model system for studying both specificity and cooperative DNA binding. Crystals of the enzyme were obtained by the hanging-drop vapor-diffusion method in complex with a 21-mer oligonucleotide. The crystals are trigonal, with unit-cell parameters a = b = 85.7, c = 202.6 A, and diffract to 2.6 A resolution on a rotating-anode X-ray generator. Preliminary X-ray analysis reveals the space group to be either P3(1)21 or P3(2)21. Interestingly, the crystals change to space group P6(1)22, with unit-cell parameters a = b = 85.5, c = 419.6 A, when the selenomethionyl (SeMet) derivative of the enzyme is co-crystallized with the same DNA. Phase information is currently being derived from this SeMet SfiI-DNA complex.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Crystallization
  • Crystallography, X-Ray
  • DNA / chemistry
  • Deoxyribonucleases, Type II Site-Specific / chemistry*
  • Oligonucleotides / chemistry
  • Protein Binding
  • Streptomyces / enzymology
  • X-Rays

Substances

  • Oligonucleotides
  • DNA
  • endodeoxyribonuclease SfiI
  • Deoxyribonucleases, Type II Site-Specific