The origin of human chromosome 1 and its homologs in placental mammals

Genome Res. 2003 Aug;13(8):1880-8. doi: 10.1101/gr.1022303. Epub 2003 Jul 17.

Abstract

Developing ordered gene maps from multiple mammalian species coupled with chromosome-painting data provide a powerful resource for resolving the evolutionary history of chromosomes and whole genomes. In this work, we recapitulate the evolutionary history of human chromosome 1 and its homologs in placental mammals, putatively the largest physical unit in the ancestral placental genome. Precise definition of translocation exchange breakpoints in human, carnivore, cetartiodactyl, and rodent-ordered gene maps demonstrate that chromosome breakpoints, previously considered as equivalent, actually represent distinct chromosome positions and exchange events. Multidirectional chromosome painting, using probes from homologs to chromosome 1 in seven mammal species from six orders of placental mammals, confirm the gene-mapping results and indicate that the multiple human chromosome 1 homologs in these species are derived from independent fissions of a single ancestral chromosome. Chromosome painting using human chromosome 1 probes identifies a single human chromosome 1 homolog in phylogenetically distant taxa, the two-toed sloth, cetaceans, and higher primates. The diverse phylogenetic occurrence of a single Hsa1 synteny among the major clades of placental mammals suggests that human chromosome 1 represents an intact ancestral chromosome, which was variously fissioned in the majority of placental species. We find that the number of human chromosome 1 fissions in a specific lineage reflects its general rate of genomic evolution. Further, historic chromosome exchange appears to have been disproportionately clustered in two breakpoint hotspots on the long arm.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Cats
  • Cattle
  • Chromosome Mapping / methods
  • Chromosome Mapping / statistics & numerical data
  • Chromosomes, Human, Pair 1 / genetics*
  • Dogs
  • Evolution, Molecular*
  • Genetic Variation / genetics
  • Humans
  • Mammals / genetics*
  • Mice
  • Molecular Sequence Data
  • Placenta*
  • Rats
  • Sequence Homology, Nucleic Acid*

Associated data

  • GENBANK/CC596505
  • GENBANK/CC596506
  • GENBANK/CC596507
  • GENBANK/CC596508
  • GENBANK/CC596509
  • GENBANK/CC596510
  • GENBANK/CC596511