Solving the phase problem for carbohydrate-binding proteins using selenium derivatives of their ligands: a case study involving the bacterial F17-G adhesin

Acta Crystallogr D Biol Crystallogr. 2003 Jun;59(Pt 6):1012-5. doi: 10.1107/s0907444903007170. Epub 2003 May 23.

Abstract

The Escherichia coli adhesin F17-G is a carbohydrate-binding protein that allows the bacterium to attach to the intestinal epithelium of young ruminants. The structure of the 17 kDa lectin domain of F17-G was determined using the anomalous dispersion signal of a selenium-containing analogue of the monosaccharide ligand N-acetyl-d-glucosamine in which the anomeric oxygen was replaced by an Se atom. A three-wavelength MAD data set yielded good experimental phases to 2.6 A resolution. The structure was refined to 1.75 A resolution and was used to solve the structures of the ligand-free protein and the F17-G-N-acetyl-d-glucosamine complex. This selenium-carbohydrate phasing method could be of general use for determining the structures of carbohydrate-binding proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylglucosamine / chemistry
  • Adhesins, Bacterial*
  • Carrier Proteins / chemistry*
  • Carrier Proteins / metabolism*
  • Crystallization
  • Escherichia coli Proteins / chemistry*
  • Hydrogen Bonding
  • Indicators and Reagents
  • Ligands
  • Models, Molecular
  • Protein Binding
  • Receptors, Cell Surface*
  • Selenium Compounds / chemistry*

Substances

  • Adhesins, Bacterial
  • Carrier Proteins
  • Escherichia coli Proteins
  • F17-G adhesin protein, E coli
  • Indicators and Reagents
  • Ligands
  • Receptors, Cell Surface
  • Selenium Compounds
  • saccharide-binding proteins
  • Acetylglucosamine

Associated data

  • PDB/1O9V
  • PDB/1O9W
  • PDB/R1O9VSF